Re: [SIESTA-L] Consulta sobre NetCharge

2009-06-11 Thread David Strubbe
Mariana, Cada átomo de sodio tiene un electrón, entonces NetCharge 0.8 remueve 0.8 electrones, y quedan 0.2 electrones. SIESTA añade una densidad uniforme a la supercelda para compensar la carga neta del sistema, para hacerlo neutral. Por eso, hay que converger el tamaño de la supercelda en la d

Re: [SIESTA-L] Bug fixed in verlet routine. Solution to the Cholesky error...

2009-06-11 Thread Jose A. Torres
Dear Andres: Thank you so much for such a good contribution! We will immediately try and test your bug-fix and probably incorporate it to the next SIESTA distribution. Again Gracias! Yours, The SIESTA Team -- Jose A. Torres, Ph.D. Manager of the SIESTA Software On Thu, Jun 11, 2009 at 5:11 P

[SIESTA-L] Consulta sobre NetCharge

2009-06-11 Thread Mariana Isabel Rojas
Hola a todos: Yo estoy trabajando con una lámina de Na que la describo con un único átomo y condiciones periódicas, con lo cual es como si tuviera un plano infinito. A este sistema le asigno una carga NetCharge 0.8 para emular iones de Na+. Parece que siesta realiza los cálculos con 0.2 electrones

[SIESTA-L] Bug fixed in verlet routine. Solution to the Cholesky error...

2009-06-11 Thread Andres Aguado
Dear SIESTA Community and Developers, I have located a small but important bug in the verlet2 subroutine implemented in the SIESTA code, which affects its performance when running in parallel mode. The verlet2 subroutine is part of the dynamics.f file and is employed to run standard microcanon

[SIESTA-L] degeneracy in SIESTA vs. CRYSTAL06

2009-06-11 Thread Ben Martin
I've been using SIESTA (with VIBRA) lately to calculate the vibrational frequencies of brucite (Mg(OH)2) at the gamma point. When I compare the results with some I have using CRYSTAL06, not only are some of the frequencies very different, but there is no degeneracy in the SIESTA calculations (see b

[SIESTA-L] Fwd: Fermid: qtot,sumq= 2687.9999999999736 NaN

2009-06-11 Thread Markus Kaukonen
Sorry the previous message (Fermid: qtot,sumq= 2687.99736 NaN), I had messed up with compilers, now siesta 2.02 works fine. Markus

[SIESTA-L] Fermid: qtot,sumq= 2687.9999999999736 NaN

2009-06-11 Thread Markus Kaukonen
Dear Siesta, I'm trying to run a two crossed nanotube (14,0) calculation with ~672 atoms and diagonal solution method (the full input fdf-file below). Getting the following error with a computer that should have plenty of memory (10GB) and with Siesta 2.02 I tested additionally taking either of the