Re: [SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Stephanie Reich
Dear Mousumi, in addition to what María and Aleksei said a comment on your input file. You can use SZ to see whether the phonon calculation works or not. However, don't expect good values for the calculated frequencies with this poor basis. You want to use DZP with a 50-100meV EnergyShift for re

Re: [SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Maria Machon
Dear Mousumi, What you need is a supercell, which you can create with fcbuild or by hand. Each unit cell vector must be repeated an odd number of times, for example 3x3x3. Then tell siesta to displace only the atoms of one unit cell (use MD.FCfirst and MD.FClast). The condition for a good dispersi

Re: [SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Andrei Postnikov
On Tue, 10 May 2005, Mousumi Upadhyay Kahaly wrote: | Dear All, | | I am trying to get phonon dispersion relation for carbon in | diamond structure. | | In order to get the dynamical matrix, I use " MD.TypeOfRun FC " | which prints out one .FC output file. | | The input

Re: [SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Mousumi Upadhyay Kahaly
Dear Maria, Steffi, and all, Thank you very much for your response. I want to calculate the general dispersion relation for my system; not only the phonon modes at Gamma. So, for this, how to use "vibra package"? Secondly, I have seen the output file. The phon

Re: [SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Stephanie Reich
Hi Mousumi, the atoms are moved into positive and negativ directions during the FC run. This double the number of elements in the force constant file (pos and neg are averaged during the vibra run). Just a warning: with the unit cell you can only calculate the phonons at Gamma. If you want dispe

Re: [SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Maria Machon
Dear Mousumi, your calculation is right, just that siesta calculates for positive AND negative displacements (see output file) which are later averaged by vibrator. So you have: 2 atoms x 3 degrees of freedom x 2 signs = 72 Regards, Maria _ María Machón Valbuena Institut für F

[SIESTA-L] Problem in understanding .FC file

2005-05-10 Thread Mousumi Upadhyay Kahaly
Dear All, I am trying to get phonon dispersion relation for carbon in diamond structure. In order to get the dynamical matrix, I use " MD.TypeOfRun FC " which prints out one .FC output file. The input structure has 2 atoms per unit cell and there are 3 degrees of freed