Re: Re: Re: [SIESTA-L] compilation error of siesta-trunk-424

2012-11-19 Por tôpico Nick Papior Andersen
This is an error of linking, you need to link against the lapack libraries. zgesv is a lapack routine. Kind regards Nick 2012/11/20 liuyunlong0902 > Dear Nick, > Thanks for your kind help! I have solved this problem, but some > other errors emerged when 'ifort -transiesta' was going on

Re:Re: Re: [SIESTA-L] compilation error of siesta-trunk-424

2012-11-19 Por tôpico liuyunlong0902
Dear Nick, Thanks for your kind help! I have solved this problem, but some other errors emerged when 'ifort -transiesta' was going on: - m_ts_aux_rout.o: In function `csolveg': /home/users/zjuiseexy/siesta-trunk-424/Transiesta/m_ts_aux_rout.F:342:

[SIESTA-L] Choosing the right value for PAO.EnergyShift, etc.

2012-11-19 Por tôpico Vinay Hegde
Hi all, If one specifies a PAO.Basis block explicitly, is there a reliable method to obtain the cutoff (r_c) values for the zeta functions? Or, if one chooses to let the PAO.EnergyShift, PAO.SplitNorm values decide the r_c values for us, is there a reliable way to assign values to those variables?

Re: Re: [SIESTA-L] compilation error of siesta-trunk-424

2012-11-19 Por tôpico Nick Papior Andersen
That error stems from no mpi-dummy routine has been created. Simply do the following: Replace on line 205: #endif with this: #else subroutine dummy() end subroutine dummy #endif I will correct this in the patched version. Kind regards Nick 2012/11/19 liuyunlong0902 > Dear Nick, >

Re: [SIESTA-L] bond-distance

2012-11-19 Por tôpico Hakkim Vovusha
Dear Chuong Yah you are correct i have seen the structure with Bhor units now i have convert this into Ang and everything is good -C-C length is 1.37 and, perfect. Thank you very much With regards hakkim On 11/19/2012 2:42 PM, Nguyen Huu Chuong wrote: Hi, I don't see any specification of

Re:Re: [SIESTA-L] compilation error of siesta-trunk-424

2012-11-19 Por tôpico liuyunlong0902
Dear Nick, Thanks for your help and sorry for not finding the similar question. I have compiled the siesta successfully, but another error emerges in transiesta compilation, I have no idea about this: -- fortcom: Error: m_glob_sparse.F90, line 208: The statement followin

Re: [SIESTA-L] compilation error of siesta-trunk-424

2012-11-19 Por tôpico Nick Papior Andersen
This question has been asked before, try and search for it. It is a bug of the intel 10 compiler. However, it can be fixed by removing the index of the lefthand side pointer assignment c(1:Npol) => contour(1:Npol) should be c => contour(1:Npol) etc. for the 3 following assignments... Kind regards

Re: [SIESTA-L] bond-distance

2012-11-19 Por tôpico Nguyen Huu Chuong
Hi, I don't see any specification of the output format. Are sure this is not simply a problem of units? by default I think distance are in Bohr with SIESTA and 2.8 Bohrs is about 1.48 angströms. Yours, Nguyen Huu Chuong Institut für Festkörpertheorie Westfälische Wilhelms-Universität Wilhelm-K

[SIESTA-L] compilation error of siesta-trunk-424

2012-11-19 Por tôpico liuyunlong0902
Dear all, I was trying to install the siesta-trunk-424 version recently. Some error occured when I used the arch.make file to compile, but the same *.make file can compile the siesta-trunk-421 successfully. I attached the error information and *.make file, would anyone help me? Best

[SIESTA-L] About the MeshCutoff

2012-11-19 Por tôpico 毛飞
Hi, all I have question about the variable MeshCutoff used in Siesta. I know if I increase the MeshCutoff higher, the results will be more accurate. I am doing a geometry optimization of a given system, sometimes the total energy increase a little (about 0.2 ~ 0.3 eV) when I increase the

[SIESTA-L] bond-distance

2012-11-19 Por tôpico Hakkim Vovusha
Hi, I am doing force minimization of graphene and after first iteration the C-C bond length is about 2.8 ang but the optimal bond length is 1.38 ang even after 40 iterations still the value is about 2.8 ang i donot know what is going on. Can any one help in this regard. I have attached the in

Re: Re: Re: [SIESTA-L] How to fix the eggbox-effect?

2012-11-19 Por tôpico Ankush Rai
Dear Homa & Fei Those errors are occurring because the script is not able to import other integrated scripts which are located at siesta-3.1/Util/Scripting folder. Now, all you need to do is to check availability of file eggbox_checker.py file in SIESTA's installation directory Example: siesta-3.1

Re: Re: Re: [SIESTA-L] How to fix the eggbox-effect?

2012-11-19 Por tôpico 毛飞
Hi, Ankush Thank you for your kind reply. I have encountered a problem when I run the executable eggbox_checker.py. $ ./eggbox_checker.py H.psf 50 H_dzp.OUT Where the H_dzp.OUT is the basis file I have produced by gen-basis.sh. The errors are followed: ./eggbox_checker.py: line 20: imp