Re: [slurm-users] Why is this command not working

2019-01-16 Thread Chris Samuel
On 16/1/19 9:00 am, Jeffrey R. Lang wrote: I’m trying to set a maxjobs limit on a specific user in my cluster, but following the example in the sacctmgr man page I keep getting this error. sacctmgr -v modify user where name=jrlang cluster=teton account=microbiome set maxjobs=30 sacctmgr:

Re: [slurm-users] Larger jobs tend to get starved out on our cluster

2019-01-16 Thread Chris Samuel
On 16/1/19 9:04 am, Baker D.J. wrote: Thank you for your reply regarding OpenMPI and srun. When I try to run an mpi program using srun I find the following.. red[036-037] [red036.cluster.local:308110] PMI_Init [pmix_s1.c:168:s1_init]: PMI is not initialized [red036.cluster.local:308107]

Re: [slurm-users] Larger jobs tend to get starved out on our cluster

2019-01-16 Thread Baker D . J .
Hi Chris, Thank you for your reply regarding OpenMPI and srun. When I try to run an mpi program using srun I find the following.. red[036-037] [red036.cluster.local:308110] PMI_Init [pmix_s1.c:168:s1_init]: PMI is not initialized [red036.cluster.local:308107] PMI_Init

[slurm-users] Why is this command not working

2019-01-16 Thread Jeffrey R. Lang
I'm trying to set a maxjobs limit on a specific user in my cluster, but following the example in the sacctmgr man page I keep getting this error. sacctmgr -v modify user where name=jrlang cluster=teton account=microbiome set maxjobs=30 sacctmgr: Accounting storage SLURMDBD plugin loaded with

Re: [slurm-users] Two jobs ends up on one GPU?

2019-01-16 Thread Chris Samuel
Hi Magnus, On 15/1/19 4:15 am, Magnus Jonsson wrote: We have a user that in some way have managed to get both jobs to end up on the same GPU (verified via nvidia-smi). So this was with nvidia-smi run by root from outside, showing both processes on the same GPU and the other with none? That

Re: [slurm-users] Accounting configuration

2019-01-16 Thread Skouson, Gary
That’s kind of what I’m looking for, but I’d like to modify the partition limit for an account rather than for a user. Something like: sacctmgr modify account name=gbstest partition=batch grpjobs=1 Using sacctmgr to add a partition for a user works fine, unfortunately, partition isn’t one of

Re: [slurm-users] [Slurm 18.08.4] sacct/seff Inaccurate usercpu values

2019-01-16 Thread Michael Robbert
Andreas, Look again. I just looked and a commit to the source code was posted to the bug yesterday afternoon. It looks like that patch applies to the cgroup plugin. It won't show up until the next release, but at least there is a fix available. Mike Robbert On 1/15/19 11:43 PM, Henkel,