Hi Shannon,
Which flavor of Linux are you compiling from?
When I compiled the latest version of TPP from Redhat EL5, the perl library
'libperl.a' was missing.
So, I have to recompiled perl and set the parameters so that the static library
is built. That's how I fixed the problem.
Good luck.
Ko
The error is actually related to Boost. What you need to do is add the lib
directory with the boost shared object files into the ld.so.conf (or place a
configuration file in /etc/ld.so.conf.d/), and then reload the ldconfig and
it should work fine. I had the same issue, since I recently did a fresh
Hi Natalie,
I now change it to:
PERL_LIB_CORE=/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE/
#PERL_LIB=/opt/ActivePerl-5.8/lib
PERL_BIN=/usr/bin/perl
However, the error still the same.
Thank you very much for your help!
Shannon
On Mar 5, 2:57 pm, Natalie Tasman wrote:
> All perl-relate
All perl-related settings must match, and you must also set PERL_BIN
as well to the same setup. You don't need PERL_LIB.
So if you're using something besides your system perl, such as a
verison of perl in /opt, everything should be set to opt (perl bin,
perl lib core).
Also, ActivePerl is only
Hi Natalie,
I've set it in the Makefile.config.incl already. Sorry I didn't post
it at beginning.
I have this 2 lines:
PERL_LIB_CORE=/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE/
PERL_LIB=/opt/ActivePerl-5.8/lib
Thank you very much,
Shannon
On Mar 5, 2:41 pm, Natalie Tasman wrote:
> H
Hi Shannon,
You'll want to search for perl's CORE directory and set that with
PERL_LIB_CORE= /usr/lib/perl5/5.8.8/x86_64-linux-ld/CORE/
(setting to whatever directory it's installed to on your system.)
Please let us know how it goes,
Natalie
On Thu, Mar 5, 2009 at 2:33 PM, shannon wrote:
>
Thank you, Brian and Natalie!
Now it made some progress. However I still got some errors:
perl -pe "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-
bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//
g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath \-w
Hi Brian,
That made some progress. Thanks very much.
However now I got another errors:
g++ -D__LINUX__ -DDEFAULT_TPP_INSTALL_ROOT=\"/usr/local/tpp/\" -
D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D__INTEL__ -DINLINING -
DTPPLIB -fPIC -I. -I/usr/local/src/trans_proteomic_pipeline/src/ -
I../e
Hi Shannon,
Also, since your boost libs are built with the compiler and threading
info in their names, you'll need to set
BOOST_LIBSPEC=-gcc41-mt
or
BOOST_LIBSPEC=-gcc41-mt-1_35
(depending on how specific you want to be.)
-Natalie
On Thu, Mar 5, 2009 at 12:51 PM, Brian Pratt wrote:
>
> Pe
Perhaps try this?
BOOST_LIBDIR=/usr/lib/lib/
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of shannon
Sent: Thursday, March 05, 2009 12:43 PM
To: spctools-discuss
Cc: tsa...@u.washington.edu
Subject: [spctools-discuss] TPP
Hi,
I've downloaded the latest TPP and upgrade my boost to 1.35.
Here is my Makefile.config.incl :
## for Boost
BOOST_INCL=-I/usr/lib/boost_1_35_0/
BOOST_LIBDIR=/usr/lib/boost_1_35_0/libs
BOOST_LIBSPEC=-gcc41-mt
LINK=shared
LIBEXT=so
However, I still got the error:
g++: /usr/lib/libboost_system
Hi everyone
I need your help to deal with the question which how to set that
selectitemes which in analyze peptides web pape of TPP v4.2.
My sample was labeled by O18.
Bright
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