I just changed to a really big value. (9 was considered big many
years ago!)
On Thu, Jun 10, 2010 at 9:49 AM, Matthew Chambers
wrote:
> Unless there are indeed downstream problems, it would be good to change that
> default upper scan number since others are running into the problem and it's
Unless there are indeed downstream problems, it would be good to change
that default upper scan number since others are running into the problem
and it's a pretty obscure source of error.
Dave, the peak filtering has been in msconvert for several months, so
presumably users can now convert str
Simon,
I may have the answer to some of the issues...
msconvert will create mzXML files in which spectra are numbered using the
Agilent native scan IDs. These are large and not consecutive. MzXML2Search was
written assuming consecutive scan numbers starting from 1. By default the
maximum scan
here's one generated using default settings in the Libra condition
file generator that's available in the TPP GUI interface:
http://bit.ly/c7dsrO
On Thu, Jun 10, 2010 at 5:56 AM, hillan...@verizon.net
wrote:
> List,
>
> Can anyone point me to a Libra condition.xml file for TMT6plex
> labels? Th
To your last point "xinteract produced this error", xinteract just
spins up other programs in turn, The crash you are seeing is indeed
in "/mnt/sanfs/APCF-PROD/APCF_WEB/tpp/cgi-bin/PepXMLViewer.cgi", which
xinteract caused to be run in order to index the pepXML file that came
out of peptideProphe
I've tried getting this to work for a while now, but I keep getting an
error code of 256. I've tried different forms of the command, but this
is an example of one I've tried:
/usr/local/src/tpp-4.3.1/build/linux/xinteract -Ndata.pep.xml -iP
pipeline0.01/data/test-forward_tandem_1.pep.xml pipeline0
List,
Can anyone point me to a Libra condition.xml file for TMT6plex
labels? The TPP 4.3.0 release notes seem to indicate that such a file
might exist, but after searching spctools-discuss archives and the TPP
4.3.0 src/Quantitation/Libra directory I failed to find it.
Thanks for any pointers,
A
