[spctools-discuss] No input spectra met the acceptance criteria

2010-07-20 Thread tommyg
Hello, I'm getting a No input spectra met the acceptance criteria error while running the latest version of X!Tandem on a 64-bit Intel(R) Core(TM)2 Duo CPU E6550 @ 2.33GHz running Fedora 11. I've successfully run many other .pkl files, but for this particular .RAW file (D2.raw), I was not

RE: [spctools-discuss] Error converting .d to mzxml

2010-07-20 Thread Karina Chmielewski
Meant, Natalie not Nicole. :) apologies. From: spctools-discuss@googlegroups.com [mailto:spctools-disc...@googlegroups.com] On Behalf Of Natalie Tasman Sent: Friday, July 16, 2010 5:52 PM To: spctools-discuss@googlegroups.com Subject: Re: [spctools-discuss] Error converting .d to mzxml

Re: [spctools-discuss] No input spectra met the acceptance criteria

2010-07-20 Thread Jimmy Eng
Tom, possible there are no ms/ms scans in this raw file? On Mon, Jul 19, 2010 at 2:01 PM, tommyg chunkeymonkeylo...@gmail.com wrote: Hello, I'm getting a No input spectra met the acceptance criteria error while running the latest version of X!Tandem on a 64-bit Intel(R) Core(TM)2 Duo CPU    

[spctools-discuss] Re: No input spectra met the acceptance criteria

2010-07-20 Thread tommyg
Hi Jim, The mzXML file is about 290 mb and has many scan entries that look like other mzXML scan entries from files that I was able to run. There are 19517 scans in this particular file. I copied an example of a scan entry. Is there something else I should look for to confirm there are ms/ms

Re: [spctools-discuss] Error converting .d to mzxml

2010-07-20 Thread Natalie Tasman
You might be dealing Agilent ChemStation .d files rather than Agilent MassHunter .d files. Confusing, no? Check out the ProteoWizard support group, which I'm forwarding this email to as well. -Natalie On Tue, Jul 20, 2010 at 9:23 AM, Karina Chmielewski karina.chmielew...@agios.com wrote:

Re: [spctools-discuss] OMSSA and TPP pipeline execution ...

2010-07-20 Thread David Shteynberg
Hi Jagan, My intuition suggests that it is advisable to use a consistent database and similar search parameters whenever possible when combining search engines with iProphet. I don't really have anything to offer here other than my intuition since I have not actually tried this. We always now