[spctools-discuss] Re: Current status of .wiff file conversion?

2011-01-25 Thread Nathan Edwards
More grist for the mill with respect to mzWiff, while I get a crash with the -c flag, if I used -c1 -c (MS and MS/MS centroiding), no crash. With respect to other discussions, mzWiff outputs in cycle major order (all experiments of each cycle in order), as opposed to msconvert and the ABI tool.

[spctools-discuss] Re: msconvert conversion of .wiff file to mzXML presents scans out of order...

2011-01-25 Thread Nathan Edwards
I'm getting back to analyzing this issue. Note that mzWiff outputs in cycle major order (all experiments of each cycle in order), as opposed to msconvert and the ABI tool. Furthermore, mzWiff's conversion time for my test case wiff/wiff.scan file (15 sample file of approximately 27K spectra,

[spctools-discuss] Re: PepXMLViewer.cgi error on TPP4.4

2011-01-25 Thread furukie
Hi, I managed to solve my problem and its running successfully! I am still having slight problems with the XPress ratio, though. I'm still reading about the error that's been previously posted by others. Hopefully the solution is out there! Thanks for the help! -Eiko On Jan 24, 7:30 pm,

Re: [spctools-discuss] Re: PepXMLViewer.cgi error on TPP4.4

2011-01-25 Thread Jimmy Eng
XPRESS had a bug in TPP 4.4.0 which was addressed in TPP 4.4.1. What solution to what problem are you looking for? On Tue, Jan 25, 2011 at 2:18 AM, furukie efur...@etc.a-star.edu.sg wrote: Hi, I managed to solve my problem and its running successfully! I am still having slight problems with

Re: [spctools-discuss] X!Tandem Cyclone with TPP for 64bit

2011-01-25 Thread Jimmy Eng
There's no inherent limitation keeping the TPP's version of Tandem from using 100% of your CPU. Did you set the spectrum, threads parameter to 4 for your quad core CPU? Any chance you're disk or I/O bound? I can't help you with Tandem Cyclone TPP; it may work. Do a quick search and see if

Re: [spctools-discuss] Re: PepXMLViewer.cgi generates huge interact.pep.xml.index

2011-01-25 Thread Luis Mendoza
Hi Tiannan, The purpose of the PepXMLViewer step within xinteract is to pre-generate an index of peptide entries that the actual viewer can use later on. This is (usually) quite convenient, as generating this index can sometimes take a while; doing it in advance translates into the user being

[spctools-discuss] RAW to mzML conversion not working in GUI

2011-01-25 Thread Stuart
Greetings, I am running the TPP under Windows 7 64bit, and I searched the forums looking for help getting msconvert to work and found a topic that seemed to help with my initial problem (http://groups.google.com/group/ spctools-discuss/browse_thread/thread/e480de4eaa396eac/