In case anyone out there is interested ...
St. Jude Children’s Research Hospital's proteomics core and the lab of
Junmin Peng currently has two bioinformatics positions available. If
you think you might be interested and want more information, check out
job #s 20477 and 20478 at https://jobs.stju
Hi Magnus,
It's your lucky day! I committed "idconvert" to pwiz last week and it's ready for testing. ;) It
supports pepXML <-> mzIdentML only at the moment, but more formats can be added later (X! BioML,
Mascot DAT, SRF, OUT, SQT) as soon as somebody gets the time to do them. It is the only pe
Dear Folks,
Does anyone know if there is already a pepXML to/from mzIdent(ML)
converter out there (possibly requiring additional input)?
All the best,
Magnus Palmblad,
Leiden University Medical Center
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Hi,
Libra gives you the results with the threshold applied only after you
run protein prophet and the values are in a text file that is created
in the folder you run the analysis.
However those values are for each protein not the peptides.
I use peptide level values so I apply the threshold myself
