If I start with SRF file, what could I do to run the peptideprophet?
On Jun 22, 10:37 am, David Shteynberg
david.shteynb...@systemsbiology.org wrote:
Hi Kinfai,
The problem lies in the error message:
(mspire: ms-sequest
not recognizedspire: ms-sequest)
We have not processed this sort of
I'm sure David will update PeptideProphet to recognize the different
search_engine attribute that your pep.xml files contain. But another
option for you if you want to use PeptideProphet right now is to
actually use the TPP's Sqt2XML program to translate your .sqt files to
.pep.xml. It's
