[spctools-discuss] Re: ascore for phospho site localization

2011-10-20 Thread LW
Hi David, I got a segmentation fault when I tried to run the command-line linux build. Is there a working linux version? Thanks, LW On Oct 19, 10:37 am, LW llee.fh...@gmail.com wrote: Hi David, Thanks for the tip. I am interested in knowing how does PTMProphet algorithm differs from

Re: [spctools-discuss] Re: ascore for phospho site localization

2011-10-20 Thread David Shteynberg
Hi LW, The version distributed in the release is perhaps a bit older than the one in SVN trunk. Have you tried building it from trunk? I know my version is working on Linux, if you build from trunk and it still doesn't work please let me know and I will commit my absolute latest code (that I've

RE: [spctools-discuss] ASAP Ratiopeptideparse.exe-application error

2011-10-20 Thread Eileen Yue
Hi Jimmy: After I tested one fraction, I run TPP for my 12 fraction together to analyze the xpress and Asap ratio. They run smoothly and completed after two days. There is similar problem like before but without any error information: I clicked the protein xpress ratio to see the all the

Re: [spctools-discuss] Problem with XPressPeptideParser

2011-10-20 Thread Jimmy Eng
There's been a fix checked in to the Sashimi subversion repository that addresses a known issue with XPressPeptideParser. Hopefully that fix addresses the issue you're seeing. If not, let me know. Since you're using linux, build XPressPeptideParser from either the trunk or branch4-5 code. On

[spctools-discuss] Re: TPP Demo 2009

2011-10-20 Thread Chris L
Changing the domain to localhost:8080 solved the problem. Thanks a lot Vishal. Regards, Chris On Oct 19, 6:55 am, Vishal Swaroop vishal@gmail.com wrote: Which browser you are using, firefox ?, try using IE or other First check if Apache is configured correctly, tryhttp://localhost, you

[spctools-discuss] Re: TPP Demo 2009

2011-10-20 Thread Chris L
Hi all, I am still encountering problem with tutorial step 6 which I am ignoring for now. In step 7, I am not able to open pepXML viewer for my interact.pep.xml and here's the screen I get when trying to open it: http://flic.kr/p/axzsk8 Any tip appreciated. Thanks again. Regards, Chris On Oct

Re: [spctools-discuss] Re: TPP Demo 2009

2011-10-20 Thread Vishal Swaroop
Hi Chris, Good to know that it worked.. I am not sure about step7 (please send me the url you are referring). I am sure there were lot of things dependent on OS.. may be try this... restart after if changing variables as I think System variable change requires restart but not user variable