I recently installed TPP 4.6 on a MacPro running Win7 64 bit. I submit 20
mzXML files for search using Tandem and after completing searching 3 - 6 of
the files the pipeline stops. I have to start a new pipeline searching the
unsearched files and it will halt again after searching 3-6 of the
da
Hi Josh,
Not all the methods are in the old interface. You need to access the
latest methods from IXRawfile5. A good example of how to use this
interface is in
https://proteowizard.svn.sourceforge.net/svnroot/proteowizard/trunk/pwiz/pwiz_aux/msrc/utility/vendor_api/thermo/RawFile.cpp
check the
Hi Josh, / Group
Back=ground Questions:
- How do they report "Noise" ??
- WHAT are they reporting when they report "Noise"
Thanks,
MAkr
On Mon, Aug 27, 2012 at 2:43 PM, Joshua G wrote:
> Hi! I am tying to write a C++ program to extract Mass, Intensity and Noise
> information for
Hi! I am tying to write a C++ program to extract Mass, Intensity and Noise
information for each m/z measurement for a collection of scans in a RAW file
from an Orbitrap. The libraries and documentation are provided through the
following link: http://sjsupport.thermofinnigan.com/public/detail.as
Hello Maik,
I am not sure what you mean that it removed phospho peptides. The default
function for PTMProphet updates the modifications to the most probable
positions, unless you used the NOUPDATE flag. Can you send the commandline
you used for PTMProphet?
Thanks,
-David
On Thu, Aug 23, 2012 a
Hello everybody,
i am currently using SpectraST for building spectra librarys, which works
fine.
When i am seraching my library with a set of known spectra everything is
okay.
But if i turn the sM parameter above 450 for testing purpose the
number of results in the pep.xml get lower, if i use
Hello everybody,
i am currently using SpectraST for building peptide librarys wich works fine.
Now i am trying to validate my librarys by searching against them with known
spectras and so i turned the -sM param up for testing purposes. I get the
strange behaviour that if i have values of more th
