Re: [spctools-discuss] More on ASAPRatio in TPP 4.5.2 vs 4.6

2012-08-31 Thread David Shteynberg
Hey Brian, I am not sure what change broke your analysis and is causing the issue you have. To track this I will need to access your files and trace the code. Can you post your files somewhere I can get to them? Thanks, -David On Fri, Aug 31, 2012 at 2:37 PM, Brian Hampton wrote: > Nothing I

[spctools-discuss] More on ASAPRatio in TPP 4.5.2 vs 4.6

2012-08-31 Thread Brian Hampton
Nothing I have tried has allowed me to quantitate using ASAPRatio in version 4.6 (Win7). So I switched back to 4.5.2 on Ubuntu 10.10 using the same data set, database, and parameter files and I get nice quantitation. Here is the relevant part of the log from 4.5.2. running: "/usr/local/apps/tpp/

[spctools-discuss] Re: Using MSFileReader API to Extract Information from Thermo RAW files

2012-08-31 Thread Joshua G
Mike, It worked for me! Thank you so much for sharing! -Josh On Monday, August 27, 2012 4:43:33 PM UTC-5, Joshua G wrote: > > Hi! I am tying to write a C++ program to extract Mass, Intensity and Noise > information for each m/z measurement for a collection of scans in a RAW > file from an O

Re: [spctools-discuss] Using MSFileReader API to Extract Information from Thermo RAW files

2012-08-31 Thread Michael Hoopmann
Josh, This works for me. I think the documentation is a bit confusing/convoluted. Rather than try to figure out what is wrong on your end, it's just easier for me to show you what works on my end. Matt is right that IXRawfile2 will work, but I know older versions are buggy (from talking with t

Re: [spctools-discuss] Using MSFileReader API to Extract Information from Thermo RAW files

2012-08-31 Thread Matthew Chambers
GetLabelData and GetNoiseData are in IXRawfile2, so you don't need to go all the way up to 5 unless you need the even newer functions. As for the crashes, you probably aren't initializing the input/output parameters correctly or you haven't run SetController before the call. You'd need to show y

[spctools-discuss] Re: Using MSFileReader API to Extract Information from Thermo RAW files

2012-08-31 Thread Darryl Davis
Its a bit off topic but anyone working on extracting data from Thermo files should check out http://code.google.com/p/unfinnigan/ . It does a great job of detailing Thermo binaries. On Monday, August 27, 2012 5:43:33 PM UTC-4, Joshua G wrote: > > Hi! I am tying to write a C++ program to extr