Zeyu, Support for this new version of Comet is not in the released versions of the TPP yet; looks like it's targeted for TPP 4.7. You'll have to build PeptideProphetParser from trunk sources if you can't wait.
On Sun, Nov 18, 2012 at 12:29 AM, zeyu sun <szy3...@gmail.com> wrote: > Dear TPP team, > I went through a Comet analysis for a set of Qtof data (mzXML format) > and when I try to view the results (pepXML) in TPP, the doteproduct, delta > and most Expect value of spectrum are 'unavailable' , and as I expected, > the following peptideprophet analysis failed also. > > Here is my output setting for the Comet search, is there any thing wrong > with it? > ##################### > output_sqtstream = 0 # 0=no, 1=yes write sqt to > standard output > output_sqtfile = 0 # 0=no, 1=yes write sqt file > output_pepxmlfile = 1 # 0=no, 1=yes write pep.xml file > output_outfiles = 0 # 0=no, 1=yes write .out files > print_expect_score = 0 # 0=no, 1=yes to replace Sp with > expect in out & sqt > num_output_lines = 5 # num peptide results to show > show_fragment_ions = 0 # 0=no, 1=yes for out files only > sample_enzyme_number = 1 # Sample enzyme which is possibly > different than the one applied to the search. > ##################### > Any ideas? > Thank you! > > -- > *SunSun* > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-discuss@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
