[spctools-discuss] How to determine (retrieve) charge information from jrap's Scan object

Hi there, I'm using jrap to parse mzxml file generated from Thermo's raw file. How can I retrieve charge state information from the Scan project? Thanks, David -- You received this message because you are subscribed to the Google Groups spctools-discuss group. To view this discussion on the

[spctools-discuss] Having trouble parsing latest Xcalibur 2.2 generated mzXML (q-executive) using Jrap

Hi there, I'm having trouble parsing the latest Xcalibur 2.2 generated mzXML (q-executive) using Jrap: for some scans, scan.getMassIntensityList method returns negative float values for m/z and intensities. Has anybody seen this before? I realized that we're using jrap-0.1.jar, just downloaded

Re: [spctools-discuss] Re: JRAP question

At this point, you can probably not worry about jrap not being updated because the mzXML format isn't really in flux. But if you want to look for alternatives ... Quite a few folks here would tell you to look at ProteoWizard http://proteowizard.sourceforge.net/ Possibly look into OpenMS (I

RE: [spctools-discuss] Re: JRAP question

And if you’re in the market for a Java implementation (like JRAP), then I’d recommend jmzreader: http://code.google.com/p/jmzreader/ Cheers, Eric *From:* spctools-discuss@googlegroups.com [mailto: spctools-discuss@googlegroups.com] *On Behalf Of *Jimmy Eng *Sent:* Tuesday, January 15,