Re: [spctools-discuss] Mascot2XML buffer overflow

2013-02-12 Thread Phil Charles
Hi again, Not sure why I didn't catch this before, but the nextmods variable is also vulnerable to the same overflow condition. A more complete fix is: *316:** *char nextpeptide[*1000*]; ... *324:** *char nextmods[*1000*]; ... *440: *int result = sscanf(nextline, %d %lf %lf %d %*1000*s %d

[spctools-discuss] Installation problem (perl?) - tpp 4.6.1

2013-02-12 Thread Pavel
Dear All, I would like to ask you for your help. I installed TPP v4.6.1 (windows version) with Apache (port 8080), everything seems to be OK - when I try localhost:8080 I can see It works. However, it is not possible to run TPP, I can see only the Internal server error page. I think the problem

Re: [spctools-discuss] mzML files to mgf

2013-02-12 Thread James Movius
Hi Bill, I have had great success using the ProteoWizard MS Convert tool. You will be able to convert your RAW files to either mzML or .mgf format with several options for centroiding, zlib compression, etc. Best to you, James On Tue, Feb 12, 2013 at 4:37 PM, Vensel, William