Re: [spctools-discuss] XTandem and k-score

2013-07-26 Thread Rishika Bisaria
Thank you.Will do it. Regards, Rishika On Fri, Jul 26, 2013 at 2:03 PM, Joseph Slagel < joseph.sla...@systemsbiology.org> wrote: > Rishika, > > The TPP version of X!Tandem has some dependencies (such as mzParser) that > are outside of the src_tpp directory. > > I hate to say it but the easiest

Re: [spctools-discuss] XTandem and k-score

2013-07-26 Thread Joseph Slagel
Rishika, The TPP version of X!Tandem has some dependencies (such as mzParser) that are outside of the src_tpp directory. I hate to say it but the easiest thing to do is download and build all of TPP. -Joe On Fri, Jul 26, 2013 at 9:44 AM, Rishika Bisaria wrote: > Hi, > Thank you for the reply.

Re: [spctools-discuss] XTandem and k-score

2013-07-26 Thread Rishika Bisaria
Hi, Thank you for the reply. I copied all teh files to src folder , changed the permission0 and ran the make command. But still I am getting this error: In file included from loadmzparser.cpp:7:0: loadmzparser.h:47:2: error: ‘BasicSpectrum’ does not name a type loadmzparser.h:48:2: error: ‘MzPars

Re: [spctools-discuss] Re: Any one has a newer mzWiff that can preserve the original sample names in wiff file?

2013-07-26 Thread Matt Chambers
I suspect it's a SIM/SRM data file so by default the SIM/SRM data is represented as chromatograms instead of spectra. The --simAsSpectra/--srmAsSpectra flags should work to address that. -Matt On 7/26/2013 11:00 AM, Jimmy Eng wrote: I would suggest that you follow-up with a post at the Skylin

Re: [spctools-discuss] Re: Any one has a newer mzWiff that can preserve the original sample names in wiff file?

2013-07-26 Thread Jimmy Eng
I would suggest that you follow-up with a post at the Skyline site requesting the mzWiff binary. Similarly, consider posting to the ProteoWizard support forum about your problems using msconvert on your wiff file; the developers there are pretty responsive to fixing any problems that people have w

[spctools-discuss] Re: Any one has a newer mzWiff that can preserve the original sample names in wiff file?

2013-07-26 Thread kangufo
msconvert (ProteoWizard 3.0.4743 32bit) should be able to do this, however, I have difficulty in using it to convert wiff files into mzXML. Every time, msconvert only generates a small mzXML (only 2kb) file which seems not contain any data (contents of a typical generated mzXML file are listed