Re: [spctools-discuss] [solved] compiling TPP 4.8.0 on "exotic" 64bit linux (massypup64)

2015-08-12 Thread Joseph Slagel
Robert, I'm guessing that this line "cut -d ' ' -f1 /etc/*release | head -n1" buried deep in the TPP Makefile is returning an empty string so when the ARCH is set to the distro + architecture you only get the architecture part. An alternative to changing the Makefile, you should be able to simply

Re: [spctools-discuss] Xinteract non-zero exit code: 34304

2015-08-12 Thread David Shteynberg
Hi Jonas, It appears you have a '|' in your command line, which is a linux pipe and might throw something off. Also, 4.6.2 is quite a vintage release that may have bugs corrected in more recent releases. So I would try first to not use the '|' character in your experiment label. Also, I would t

[spctools-discuss] Xinteract non-zero exit code: 34304

2015-08-12 Thread ruhe
Dear folks, I am using TPP 4.6.2 and the pipeline always ran perfectly. I switched now the MS/MS setup and try to run the pipeline with .mgf files that were generated with MaxQuant, because I want to have them comparable to my former data instead of just working with MaxQuant. With these new .