Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error

Hi Luis, That would be great - I'd love to use it even before the official release. Would it be possible to post a link to the unsupported pre-release executable? Thanks, Joey On Friday, March 17, 2017 at 3:49:06 PM UTC-7, Luis wrote: > > Hi Joey, > > No bother at all, and thanks for

Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?

Hi David, Thanks a lot, then it should be the issue of repeating spectrum name. In this case, each spectrum has two rank one hits, one from decoy sequences and the other one is from Target sequences. Thanks, Chih-Chiang On Apr 4, 2017 4:53 PM, "David Shteynberg" <

Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?

The message: "Found 4823 Decoys, and 4820 Non-Decoys" suggests there a no correct result in this dataset if the decoy database contains 50% decoy sequences. Does this suggest your Decoy Search contains only Decoys? If you have no correct results in the search you would still expect half of your

Re: [spctools-discuss] qualscore mzXML parse error

I'm getting a very similar error. Has anyone been able to resolve this yet? > java -jar C:\TPP\bin\qualscore.jar -c 1.0 -p 0.1 .\interact.iproph.pep.xml QualScore version 1.0_2 Copyright (C) 2006 Institute for Systems Biology, Seattle WA QualScore is free software and comes with absolutely no

Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?

No. It uses the top hit only. On Tue, Apr 4, 2017 at 7:34 AM, Chih-Chiang Tsou wrote: > Hi > > Is there any option in xinteract to tell PeptideProphet take topN hits for > each spectrum for probability calculation? > > Thanks, > Chih-Chiang > > -- > You received this

[spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation?

Hi Is there any option in xinteract to tell PeptideProphet take topN hits for each spectrum for probability calculation? Thanks, Chih-Chiang -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop