[spctools-discuss] Index mzXML file error

2018-03-17 Thread Pavel
Hi, I try to re-index some mzXML files (SWATH wiff files converted to mzML with AB Sciex convertor and then using MSConvert for mzML to mzXML conversion) with TPP, but the new files are not created. The error below still occurs. Any idea? Thanks COMMAND 1 [SAT MAR 17 16:42:17 2018] EXECUTING

[spctools-discuss] Re: Exporting Proteome Discoverer 2.2 results to TPP

2018-03-17 Thread Alejandro
Hi Joseph, I have never tried to do that. Nevertheless, have you tried to refresh the paths of you pepxml files? Sometimes, if I run a search engine outside of the Petunia interface all issues are resolved after updating the paths (RAW files, database). Maybe you have luck. Still, it might be