> > > The automated model invalidator seems to be getting triggered by this > dataset. I will adjust the settings for Kojak analysis as this should not > be happening on this data. In the meanwhile, fou can override this problem > by using the PeptideProphetParser option FORCEDISTR (possibly combined with > IGNORECHG= for ones you want to exclude.) These options are different for > xinteract -OF and -I > > Hi David, Using -OF and -I options with xinteract solved the problem for me. Thanks very much for your help! Alex
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