Hi Luis,

Thanks for the tip. Indeed was the location of the java plugin. Now its 
working.

Thanks.

Alejandro

On Monday, March 9, 2020 at 7:47:42 PM UTC+1, Luis wrote:
>
> Hello Alejandro,
>
> Can you share the html source?  The most likely culprit is that it has the 
> wrong location of the javascript files.
>
> It may also be the case that if you re-installed TPP after you generated 
> the models files, they may need to be updated.  The simplest way to do this 
> is to delete the html models file (only!) and re-open the pepXML file in 
> PepXMLViewer to trigger the generation of the models file.
>
> Hope this helps,
> --Luis
>
>
> On Sun, Mar 8, 2020 at 5:58 PM Alejandro <agome...@gmail.com <javascript:>> 
> wrote:
>
>> Dear all,
>>
>> I'm running TPP 5.2 both build 202003062318-8034 as well as have tried 
>> the release 5.2 in Ubuntu 18.04, installed using the recommended 
>> instructions. Everything that I have tested seems to work except the 
>> generation of the plots of the models in both PeptideProphet and 
>> ProteinProphet results. I can see the Sens/Error tables but in the model 
>> charts in the place were the graph should go there is just white. I have 
>> checked the source of the html and it seems to have the info. I don't know 
>> how to troubleshoot this and/or if it is a common thing. Hope you can give 
>> me some advice, as the visual interpretation of the graph is quite useful 
>> as a first look in the analysis.
>>
>>
>>
>> [image: screen.png]
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> Best,
>>
>> Alejandro
>>
>>
>>
>>
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>>
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