Worked like a charm, thanks David!
Mike
On Monday, November 14, 2022 at 5:32:29 PM UTC-8 David Shteynberg wrote:
> Hi Mike,
>
> With Kojak data the peptide length is meaningless and recorded as zero in
> the pepXML. The default parameters of xinteract use min peptide length of
> 7 which inval
Hi Mike,
With Kojak data the peptide length is meaningless and recorded as zero in
the pepXML. The default parameters of xinteract use min peptide length of
7 which invalidates all results in this file. You have to run with min
peptide length of zero when processing Kojak data: xinteract -l0
Ch
Greetings TPP folks,
I just pulled the latest Docker image and am trying to run the Kojak then
PeptideProphet. Kojak runs fine, PeptideProphet produces an error. Here is
my output:
```
sudo docker run -v `pwd`:/data spctools/tpp xinteract
QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml
xinteract (
