Re: [spctools-discuss] Access to Mascot file results

2023-07-26 Thread Carlo de Oliveira Martins
These are valuable tips. I will check if our Admin can open this port. Definitely, if I am able to open the copied .dat files, this will be a great improvement. Thank you, On Wed, 26 Jul 2023 at 20:08, 'Luis Mendoza' via spctools-discuss < spctools-discuss@googlegroups.com> wrote: > Hello Carlo,

Re: [spctools-discuss] Access to Mascot file results

2023-07-26 Thread 'Luis Mendoza' via spctools-discuss
Hello Carlo, I recall seeing a report like this years ago, and I think it has to do with configuring the Mascot server to open its port. I forget the details of how this is done, and we don't have a Mascot server in-house where we can test; perhaps someone else is able to provide help on this.

[spctools-discuss] Access to Mascot file results

2023-07-26 Thread Carlo de Oliveira Martins
Dear all, I have access to the Mascot Daemon Server through my institution. However, when I try to type in the URL of the Mascot Server URL, I get an error saying that the server seems not to exist. Is this related to any specific format, e.g., the URL has to end with /cgi/, or something of the

[spctools-discuss] Problem with PeptideProphet

2023-07-26 Thread Tanmay Singh
Dear all I keep trying to run PeptideProphet on two * pep.xml files but keep getting this error. What could the issue be and how can I solve it? Error C:/TPP/bin/xinteract (TPP v6.3.2 Arcus, Build 202305092202-8951 (Windows_NT-x86_64)) using MAXTHREADS=1 for PeptideProphet... running:

[spctools-discuss] converting prot.xml to tsv/something else

2023-07-26 Thread Emma Whittington
Hi, I am running TPP 6.2.0 via a singularity image. I have been using the EXCELXX option in ProteinProphet to a tab-separated file. However, that is for some reason not working at the moment (tried today and yesterday). I tried to also use ProtXMLViewer.pl but it doesn't seem to exist in the