eps" value. Please let me know if further clarification
would be helpful or if you have other questions.
Cheers,
-David
On Wed, Jun 28, 2023 at 9:27 AM Hampton, Brian
mailto:bhamp...@som.umaryland.edu>> wrote:
Hello David,
I have difficulty understanding this. I had always operated u
Hello David,
I have difficulty understanding this. I had always operated under the
assumption that the "num unique peps" would be less than or equal to the "tot
num peps" - because - I thought "tot num peps" = "num unique peps" + number of
(shared) peptides also mapping to given protein. Is t
;>
wrote:
Hi Brian,
Can you post the files for me to trace the execution of RefreshParser and
troubleshoot the issue?
Thanks,
-David
On Tue, Jan 29, 2019 at 7:24 AM Hampton, Brian
mailto:bhamp...@som.umaryland.edu>> wrote:
Hello,
I cannot determine why RefreshParser would not be ab
trace the execution of RefreshParser and
troubleshoot the issue?
Thanks,
-David
On Tue, Jan 29, 2019 at 7:24 AM Hampton, Brian
mailto:bhamp...@som.umaryland.edu>> wrote:
Hello,
I cannot determine why RefreshParser would not be able to remap all entries.
Since the PSMs are derived from
Hello again,
Is there a publication or other information that explains Quantic? Why would
one choose Quantic or St. Peter for LFQ analysis?
I have looked for this on the Wiki and in the release notes, as well as a
keyword search but can’t find the information. Maybe I missed something.
Than
Hello,
I cannot determine why RefreshParser would not be able to remap all entries.
Since the PSMs are derived from the fasta db used in the search, I would expect
all PSMs to map to their respective database entries. For example:
running: "/usr/local/tpp/bin/RefreshParser
'/tmp/X33oJO/data/
Hello Paul,
The quickest way to greater understanding on the use of the tools is to execute
the binaries in question at the command line with no options specified. The
output will show information about their usage. For example on my old Linux
install of TPP 4.8, at the command line, I change
Thanks Jason! Once your manuscript is published it would be great to announce
that on this list.
Cheers!
Brian
On Jul 12, 2017, at 8:13 AM, Jason Winget
mailto:jwin...@gmail.com>> wrote:
Hi Brian,
StPeter is a direct implementation of the Normalized Spectral Index, described
by Griffin et.
