nderstand
> the analysis and tools well enough that you need to search a smaller
> database, minimally use 500 or 1000 protein sequences and include your
> protein of interest.
>
> Jimmy
>
> On Wed, May 3, 2023 at 9:41 PM felipe velasquez
> wrote:
>
>> Hello
you use decoys?
> Contaminants?
>- Does the virus protein contain peptides that may be shared with
>proteins in the sample itself? Do you observe unique/proteotypic peptides
>from that protein?
>
> Cheers,
> --Luis
>
>
>
> On Sun, Apr 30, 2023 at 7:13 PM
Hello
I have a question about protein validation. I am trying to use TPP to
identify post-translational modifications of certain proteins. I performed
a Comet search using the sequence of my protein of interest. However, while
exploring another database, I performed a search using a protein that i
ile to this pepXML?
> Do you get any other errors or warnings before this step? Have you been
> able to run other data as a test of your TPP install?
>
> Cheers,
> --Luis
>
>
> On Fri, Apr 28, 2023 at 11:25 AM felipe velasquez
> wrote:
>
>> Hello luis, thanks.
gt; We do note that in some instances other software does tend to inflate the
> number of results provided to the user, albeit with either a very high or
> otherwise poorly characterized error rate.
>
> Again, without knowing specifics, it is impossible to tell what could be
> going
hello again
I am trying to analyze some samples from thermo raw data, but I cannot find
any results. However, another person analyzed the same data using another
platform and found some results. Is this normal?
Felipe
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hi, it seems I have the same problem. were you able to find a solution?
El miércoles, 27 de mayo de 2020 a las 13:36:53 UTC-4, Nimai Charan
Mahanandia escribió:
> I am trying to convert the Bruker .baf file to mzML format. However, it is
> not converting and showing error.
>
> Can anybody help
