Hi David. Thanks for your response.
The problem was solved after I closely looked at the tandem.params file I
created after upgrading from 4.5.2 to 4.6. I made a silly copy paste
error. In the static modifications section I had two decimal points in one
of the modification mass specifications.
Hi Brian,
Have you tried removing the static option -S when running this command?
Thanks,
-David
On Tue, Aug 28, 2012 at 2:50 PM, Brian Hampton wrote:
> Hello,
>
> I am trying the newest TPP installed on Win7 using the installer. I have
> two small data sets of differentially labelled peptide
Hello,
I am trying the newest TPP installed on Win7 using the installer. I have
two small data sets of differentially labelled peptides searched separately
with Tandem where one search specifies all light and the second all heavy
labelled modifications. When running ASAPRatio, I select static
