Re: [spctools-discuss] Error compiling TPP 4.6.2 on RHEL 6.3

2013-03-18 Thread Joseph Slagel
Ah ok thanks! That explains the problem. I'll make sure we have a fix in the upcoming release. On Mon, Mar 18, 2013 at 10:59 AM, Damian wrote: > > On 03/18/2013 01:06 PM, Joseph Slagel wrote: > > Thanks for running the script. That is odd. Where are you running the > make command from, are yo

Re: [spctools-discuss] Error compiling TPP 4.6.2 on RHEL 6.3

2013-03-18 Thread GATTACA
Hi Joe, I ran the find_arch.sh script and it returned a blank line which is really weird since I'm running RHEL 6.3 I manually forced the script to set the DISTRIB_ID to be "RedHat" and things compiled now. Thanks for the help! Damian On Wednesday, March 13, 2013 1:45:07 PM UTC-4, jsl...@s

Re: [spctools-discuss] Error compiling TPP 4.6.2 on RHEL 6.3

2013-03-13 Thread Joseph Slagel
Damian, The reason for the funny error is because the build destination is a directory named -. In your case the operating system wasn't filled in hence the " -x86_64". Buried deep in the Makefile(s) for TPP is OBJ_ARCH, the destination used for the build directory. Its value is derived from th

Re: [spctools-discuss] Error compiling TPP 4.6.2 on RHEL 6.3

2013-03-13 Thread David Shteynberg
Hey Damian, You can try a sed command to replace the directory containing '-' which makes it break at the mkdir. Try: sed -i 's/-x86_64/x86_64/g' Makefile* -David On Wed, Mar 13, 2013 at 9:06 AM, GATTACA wrote: > Hi guys, > > I'm trying to update our version of TPP to the latest-n-greatest s

[spctools-discuss] Error compiling TPP 4.6.2 on RHEL 6.3

2013-03-13 Thread GATTACA
Hi guys, I'm trying to update our version of TPP to the latest-n-greatest stable release. I've downloaded TPP-4.6.2.tgz from sourceforge and gone through the usual make command. I get this error when I hit the X!Tandem build step: mkdir -p /usr/local/apps/tpp/trans_proteomic_pipeline/src/../bu