Hello Giangiacomo,
You can use the Lib2html tool to convert an splib into a webpage with
clickable links to library spectra. You can launch this tool from
SpectraST Tools -> Convert Libraries to HTML.
Hope this helps,
--Luis
On Thu, Jan 21, 2021 at 12:09 AM giangiacomo beretta <
Hi David, sorry for the mistypos!
Yes I run PeptideProphet under Analyze Peptides, and no relevant messages
were generated :)
However, I forgot to mention that the problem is related to
interact.pep.xml processing in SpectraST in its command line version
(independent from TPP).
I am sorry, I
I am not sure I know a tool called "ProptideProphet" ;) Perhaps you tried
to run PeptideProphet but it generated no results for you? When you run
"Analyze Peptides" in the TPP interface, it should create a file called
interact.pep.xml by default, that will contain probabilities among other
Hi David! It works nicely, thank you !
Now I am experiencing another issue of mine :)
I run ProptideProphet on the XML fiel generated by XTandem. I need this
file presuming that PP will add probabilities to the identified peptides as
this is requested by SpectraST to generate the
Dear Giangiacomo,
Thanks for trying the TPP and reporting the problem. TPP uses the
proteowizard's msconvert tools for this step. You can remedy the problem
by either upgrading to a newer version of proteowizard's msconvert tool or
use --ignoreUnknownInstrumentError option with your current
Hi, when I try to convert raw files, the conversion tool stops immediately
reporting the following error:
Reader_Thermo::fillInMetadata] unable to parse instrument model; please
report this error to the ProteoWizard developers with this information:
model(Orbitrap Eclipse) name(Orbitrap
