Re: [spctools-discuss] New to TPP: finding FDR corresponding to probability

Hello and welcome! You are correct! That is the model-estimated error/sensitivity table for ProteinProphet, in this case. A table of this sort is generated for PeptideProphet model estimates, iProphet based model estimates or ProteinProphet model estimates depending on the file being considered.

[spctools-discuss] New to TPP: finding FDR corresponding to probability

I'm new to TPP and trying to find the the probabilty correspnding to the Target FDR of 1% Do I need to find it out from the following table? The probability corresponds 0.74 corresponds to 1% FDR? ProteinProphet Table -- You received this