Hello Mehar,
Unfortunately PTMProphet does not calculate the protein position of the
modified amino acids; we may add this to a future version of TPP.
In the meantime, you would need to determine it from mapping the peptide
sequence onto its corresponding protein, with the caveat that the
Dear Sir/Madam,
I have a query related to PTMprophet analysis.
I performed comet search for an mzml file and put it for further analysis
as under:
-Using TPP tools Analyse peptides Checked for iprophet proteinprophet
PTMprophet
-Mass added for PTMs were:
- 79.966 Da for
