Re: [spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification

2024-04-11 Thread 'Juergen Bartel' via spctools-discuss
Hi David, Thank you for modifying the code so quickly! I have just tested Lib2HTML with the new prerelease and it works perfectly fine now. Cheers! Juergen David Shteynberg schrieb am Donnerstag, 11. April 2024 um 02:28:19 UTC+2: > Hello Juergen, > > Thanks for providing the test data. I was

Re: [spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification

2024-04-10 Thread 'David Shteynberg' via spctools-discuss
Hello Juergen, Thanks for providing the test data. I was able to modify the code to allow Lib2HTML to also read the user modifications and display the from the HTML page. The prerelease installer that has this feature is available here:

[spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification

2024-04-05 Thread 'Juergen Bartel' via spctools-discuss
Dear David, to generate my library I have done a couple of steps: 1) modified the file utils.py from seq2ms to contain my modifications: *# C H N O S P# mods = {"ox" : [0,0,0,1,0,0], ## changed this line to enable sulfatase modification prediction se=serine; al=formylglycine-aldehyd;