[spctools-discuss] Re: Percolator Error in TPP

2020-06-09 Thread Gabrielle H
Hello Jimmy, I was able to create a .pin file from Comet, but how do I run that in the external Percolator tool on TPP when it only accepts .txt files? Thank you for your help! Best, Gabby On Monday, June 8, 2020 at 6:43:54 PM UTC-4, Jimmy Eng wrote: > > Confirm that you are using Comet's

[spctools-discuss] Re: Percolator Error in TPP

2020-06-09 Thread Gabrielle H
Hello Jimmy, I have not tried that, that's probably where the problem is coming from. I will do that and get back to you. Do you know how to kill the command of the job that is currently running without getting that error? Thank you for your help! - Gabby On Monday, June 8, 2020 at 6:43:54

[spctools-discuss] Re: Percolator Error in TPP

2020-06-08 Thread Jimmy Eng
Confirm that you are using Comet's Percolator output which you can generate by setting "output_percolatorfile = 1" in the search parameters. This will create a tab-delimited text file with a ".pin" file extension. Note that this is different than Comet's ".txt" output file which is a