Yes, this is how you do it.
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Hi Jason,
Thank you for your answer. I just want to assure myself - is it possible to
do this like selecting two or more files (pep.xml after a tandem search) in
TPP with the selection of one interact.pep.xml output file? Since I use the
Windows TPP this would be the best way if it is ok.
I
Hi Pavel,
I believe that the way to merge data is as follows:
1. Merge the pep.xml results (from a single search engine) using
InteractParser into an interact.pep.xml
2. Run RefreshParser on the interact.pep.xml
3. Continue the TPP pipeline (PeptideProphet, iProphet, ProteinProphet)
