Indeed. Everything works now.
Bjorn
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Ignore that message regarding the font (which you wouldn't normally see).
A set of Windows fonts are listed to be used if available for the text
in the plots; otherwise whatever default system font gets used for
non-Windows systems.
On Wed, Aug 25, 2010 at 12:56 PM, Bjorn wrote:
> AHA!!
>
> I re
AHA!!
I removed the old link and installed gnuplot with sudo port install
gnuplot.
then, sudo ln -s /opt/local/bin/gnuplot /usr/bin/gnuplot
I checked my TPP and I have graphs!!
Then, I cd to the P010170 folder in terminal and type "gnuplot
100805.LC2.IT2.XX.P01070_2-A.10_01_805.1366991230.gp"
I
Bjorn,
As you already have macports installed, I suggest that you temporarily
move the sourceforge version of gnuplot out of the way, and then try
"sudo port install gnuplot".
-Natalie
On Wed, Aug 25, 2010 at 12:22 PM, Bjorn wrote:
> I found that the png has something to do with libgd or libpn
I found that the png has something to do with libgd or libpng. I know
I installed gd2, but not the other 2...
can I install libpng or libgd with macports? Would that work?
I checked /usr/lib and I don't have libgd or libpng. Do you?
Bjorn
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Hi,
I did not install with fink or MacPorts.
I got it here (if I remember correctly):
http://sourceforge.net/projects/gnuplot/files/
This is the version:
G N U P L O T
Version 4.4 patchlevel 0
last modified March 2010
System: Darwin 10.4.0
Copyright (C) 1986-1993,
You did it all right. Can you check which version of gnuplot you have
installed? The TPP requires 4.2 and I suspect you might have an older
version installed.
Type 'gnuplot' on the command line to see what version you have.
'quit' will get you out of the gnuplot prompt.
On Wed, Aug 25, 2010 at
Hi Bjorn,
how did you install gnuplot? It looks like that it was compiled without png
output option. From what I remember fink compiles gnuplot with png by default.
Maybe, install via fink and use the resulting /sw/bin/gnuplot binary as
described in my old wiki tutorial.
Cheers
Ulrich
On 20
Jimmy,
Thanks for the help!
I hope I did it right (still new to UNIX and the likes).
I added &Debug=1 at the end of the URL and reloaded the webpage.
(still the error of course)
In the P01070 folder, more files had been created:
100805.LC2.IT2.XX.P01070_2-A.10_01_805.1366991230-ms.gp
100805.LC2.I
Bjorn,
In the link to the plot-msms.cgi spectrum viewer, add "&Debug=1" to
the URL. This causes the CGI to not remove the intermediate files it
uses including the *.gp gnuplot script and the *.spec? files which are
the data files to plot (peak lists and peak annotations).
Do that once and then r
adding: sudo ln -s /usr/local/bin/gnuplot /usr/bin/gnuplot
did not solve it either...
bjorn
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Thanks for the reply Ulrich!
I fixed the html file!
for gnuplot:
- I just typed sudo chown -R www /usr/local/bin/gnuplot (should be
ok??)
- which gnuplot leads here: /usr/local/bin/gnuplot
- cmd-i gives: _WWW read/write (also a wheel owner ?? and everyone.
They have read access)
Any link needed t
Hi,
Still the error...
I changed the file name and did the tandem search again. Then convert
to pep.xml.
when I open the file, I still get this error, but I get a list of
hits:
Unable to access xml file via webserver, so cannot check xml file for
changes ()
Check webserver configuration if desired.
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