Hi David,
Thank you for your explanation and suggestions! I will install Java 9 JDK
and update the Windows PATH accordingly.
You mentioned several important settings for PeptideProphet in MSFragger
searches. Could you help me check if this setting is correct?
[image: Snipaste_2024-05-10_21-21-4
Hi Zeyu,
Thanks for your question and for your interest in the TPP.
Yes I use MSFragger in the TPP and I did run into this exact problem last
week. It required me to install java 9 jdk that I downloaded and installed
from oracle. I then had to make sure that the windows PATH pointed to the
cor
Hi,
Do you use MSFragger in TPP? I downloaded MSFragger 4.0 and renamed it,
then placed it in this path: C:/TPP/bin/msfragger/msfragger.jar. However,
when I search my files, it seems to report an error related to the JRE
version. But MSFragger desktop GUI runs fine:
Error: A JNI error has occu
