I have faint memories of dealing with this but I'm away from work so
can't confirm. This might've been fixed in rev 4945 check-in on April
15th; my check-in log message for Mascot2XML was "parsing update for
entry with protein n-term modification which doesn't seem to be
handled by current code".
[mailto:natalie.tas...@insilicos.com]
Sent: Wednesday, June 30, 2010 4:39 PM
To: spctools-discuss@googlegroups.com
Cc: Markey, Sanford P. (NIH/NIMH) [E]; jeck...@labkey.com
Subject: Re: [spctools-discuss] TPP parsing error during Mascot Search result
conversion to pepXML
It is possible to try the same
It is possible to try the same analysis on the latest version of the
TPP and see if the problem has been already addressed? Please let us
know. If you still find the issue after testing the latest software,
please upload test files to the newsgroup's file section which
generate the same issue, an
Can anyone tell me if this bug reported back in April 2009 has been
fixed:
Thermo Orbitrap RAW file is inputted into tpp -> convert to mzxml ->
convert to mgf -> run mascot -> convert to pepXML
The problem is as follows:
When I use the mascot default modification Acetyl (protein N-term),
the T
