Oded,
The Xpress values you see in the pep.xml file, which means those
viewed in the PepXML Viewer, are those that are most correct based on
your run settings. What you view in the XPressPeptideUpdateParser.cgi
ideally should correspond exactly to the same numbers but they don't
in the one case
Dear all,
I am using TPP for SILAC analysis of Obritrap X!tandem data (with K+8/R
+10).
I noticed some differences between the peptide Xpress values shown
thorough ProtXML viewer (XPressCGIProteinDisplayParser.cgi) and pepXML
viewer (PepXMLViewer.cgi) and those that appear in
