Dear list,
I have three question regarding ASAP and XPRESS:
1)
I analyzed a data set generated from a SILAC sample on an Orbitrap.
The data was searched using Sequest with variable modifications on R
and K. I used ASAP and XPRESS for quantitaton with the following
command (TPP v4.3 JETSTREAM rev
Lukas,
These tools could definitely be optimized and improved, especially for
high res data that didn't really exist when they were first developed.
That said, with respect to question 1, you're using two imperfect
tools on presumably large datasets so it's not surprising to see some
