Re: [spctools-discuss] process Comet results with Peptideprophet

2012-11-20 Thread Jimmy Eng
Zeyu, Support for this new version of Comet is not in the released versions of the TPP yet; looks like it's targeted for TPP 4.7. You'll have to build PeptideProphetParser from trunk sources if you can't wait. On Sun, Nov 18, 2012 at 12:29 AM, zeyu sun szy3...@gmail.com wrote: Dear TPP team,

[spctools-discuss] process Comet results with Peptideprophet

2012-11-18 Thread zeyu sun
Dear TPP team, I went through a Comet analysis for a set of Qtof data (mzXML format) and when I try to view the results (pepXML) in TPP, the doteproduct, delta and most Expect value of spectrum are 'unavailable' , and as I expected, the following peptideprophet analysis failed also. Here is my