Re: [spctools-discuss] running xtandem in parallel on the same fasta file

2012-02-14 Thread Shaun Garnett
Subject: Re: [spctools-discuss] running xtandem in parallel on the same fasta file Shaun, Multiple processing reading the same fasta file off of an NFS partition has never really been a performance issue that I've ever noticed through the years on different clusters (even pushing a hundred

[spctools-discuss] running xtandem in parallel on the same fasta file

2012-02-10 Thread naturofix
I've installed TPP 4.5.1 on a linux computer cluster, which enables parallel processing of numerous files. Unfortunately this does not work with xtandem since all instances are trying to access the same fasta file. Only very few of the processes can run at any one time. Is there a simple way

Re: [spctools-discuss] running xtandem in parallel on the same fasta file

2012-02-10 Thread Jimmy Eng
Shaun, Multiple processing reading the same fasta file off of an NFS partition has never really been a performance issue that I've ever noticed through the years on different clusters (even pushing a hundred processes accessing the same fasta). If this really is a problem for you, the obvious

RE: [spctools-discuss] running xtandem in parallel on the same fasta file

2012-02-10 Thread Eric Deutsch
] running xtandem in parallel on the same fasta file Shaun, Multiple processing reading the same fasta file off of an NFS partition has never really been a performance issue that I've ever noticed through the years on different clusters (even pushing a hundred processes accessing the same fasta