Thanks a lot Mike, for the little advice and for your big work!

And here's the working code for the people who comes to this page later.

categories = db.session.query(Categories).filter(Categories.parent_id == 
None, Categories.site_id == 1).\
 outerjoin(child, Categories.children).filter(Categories.status == 'ACTIVE', 
child.status == 'ACTIVE').\
 options(contains_eager(Categories.children.of_type(child))).all()


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