Rather than changing the style of each individual circle, one could change them 
using a style element, like so:


<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11-flat-20030114.dtd";>
<svg xmlns="http://www.w3.org/2000/svg";
  xmlns:xlink="http://www.w3.org/1999/xlink"; onload="init(evt)">
  <script type="text/javascript"><![CDATA[
   var style; 
    
   function init(evt){
     style = document.getElementById('dynamicStyle');
     var _SVGNS_ = "http://www.w3.org/2000/svg";;
     for(i=0;i<60;i++){
       for(j=0;j<50;j++){
         var group=document.createElementNS(_SVGNS_,"g");
         
group.setAttributeNS(null,'transform','translate('+(i*10)+','+(j*10+50)+')');
         
         var circle=document.createElementNS(_SVGNS_,"circle");
         circle.setAttributeNS(null,'r',2);
         
         group.appendChild(circle);
         evt.target.appendChild(group);
       }
     }
   }
   
   function setCircleDisplayProperty(propertyValue){
     style.textContent = "circle{display:" + propertyValue + "}";
   }
   
]]></script>
  <style type="text/css" id="dynamicStyle"/>
  <rect width="60" height="40" fill="red" 
onclick="setCircleDisplayProperty('inherit')"/>
  <rect x="70" width="60" height="40" fill="blue" 
onclick="setCircleDisplayProperty('none')"/>
</svg>


Try it here:
http://jsbin.com/ejasof/1/

It seems to work a tiny bit faster in Firefox.



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