I also have the same problem with ubuntu 9.10 i386 and ATI RADEON HD!!
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Unlock screen is invisible with Nvidia twinview
https://bugs.launchpad.net/bugs/45018
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I confirm this problem in Karmic i386.The tray icon disappears
sometimes.( not always)
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aMSN doesn't always respect settings (tray icon)
https://bugs.launchpad.net/bugs/365196
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Same problem here.When I minimize the amsn window,there is a graphical
trace of the window bottom on my desktop.I use Karmic i386.
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Screen refresh problems when minimizing aMSN to tray using Close button or
title bar
https://bugs.launchpad.net/bugs/465644
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