I noticed the same errors about adding certificates/pem files when
upgrading to 11.10 Oneiric from 11.04

Ubuntu on Virtualbox 4.1

Installed java sdk on Ubuntu 10.04, using aptitude as:
sudo aptitude install openjdk-6-jdk

Upgrade to 11.10 from Update manager UI
I did not run pending 11.04 updates before starting the upgrade to 11.10

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https://bugs.launchpad.net/bugs/873517

Title:
  When upgrading from maverick to oneiric receieved a number of error
  messages about ssl certs

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