Public bug reported:

Symptoms are that cache files in /var/cache/apparmor and profiles in
/var/lib/apparmor/profiles are sometimes corrupted after a reboot. We've
already fixed several bugs in the apparmor and click-apparmor and made
both more robust in the face of corruption, but we've still not found
the cause. The corruption can still affect real-world devices: if a
profile in /var/lib/apparmor/profiles is corrupted and the cache file is
out of date, then the profile won't compile and that app/scope won't
start.

Workaround: remove the affected profile and then run 'sudo aa-
clickhook'. This obviously is not viable on an end-user device.

The investigation is ongoing and this may not be a problem with the
kernel at all, so this bug may be retargeted to another project.

The security team and the kernel team have discussed this a lot and
Colin is currently looking at this. This bug is just so it can be
tracked. Here is an excerpt from my latest email to Colin:

"I believe I have conclusively ruled out apparmor_parser and aa-
clickhook by creating a new 'home/bug/test-with-true.sh'. Here is the
test output:

http://paste.ubuntu.com/8648109/

Specifically, home/bug/test-with-true.sh changes the interesting parts
of the algorithm to:

1. wait for unity8 to start (this ensures the apparmor upstart job is finished)
2. restore apparmor_parser and aa-clickhook, if needed
3. if /home/bug/profiles... exists, perform a diff -Naur /home/bug/profiles...
   /var/lib/apparmor/profiles and fail if differences (note, apparmor_parser
   and aa-clickhook were /bin/true during boot so they could not have changed
   /var/lib/apparmor/profiles)
4. verify the profiles, exit with error if they do not
5. alternately upgrade/downgrade the packages
6. verify the profiles, exit with error if they do not
7. copy the known good profiles in the previous step to /home/bug/profiles...
8. have apparmor_parser and aa-clickhook point to /bin/true
9. reboot
10. go to step 1

In the paste you'll notice that in step 6 the profiles were successfully
created by the installation of the packages, then verified, then copied
aside, then apparmor_parser and aa-clickhook diverted, then rebooted,
only to have the profiles in /var/lib/apparmor/profiles be different
than what was copied aside. It would be nice to verify on your device as
well (I reproduced several times here) and verify the reproducer
algorithm. I think this suggests this is a kernel issue and not
userspace.

IMPORTANT: you will want to update the reproducer and refollow all of these 
steps (ie, I updated the scripts, the debs, the sudoers file, etc):
$ wget http://people.canonical.com/~jamie/cking/aa-corruption.tar.gz
$ tar -zxvf ./aa-corruption.tar.gz
...

$ adb push ./aa-corruption.tar.gz /tmp
$ adb shell
phablet@ubuntu-phablet:~$ cd /tmp
phablet@ubuntu-phablet:~$ tar -zxvf ./aa-corruption.tar.gz
phablet@ubuntu-phablet:~$ sudo mount -o remount,rw /
phablet@ubuntu-phablet:~$ sudo cp ./aa-corruption/etc/sudoers.d/phablet
/etc/sudoers.d/
phablet@ubuntu-phablet:~$ sudo mount -o remount,ro /
phablet@ubuntu-phablet:~$ sudo cp -a ./aa-corruption/home/bug /home
phablet@ubuntu-phablet:~$ exit
$ cd ./aa-corruption
$ ./test-from-host.sh
...

The old script is still in place. Simply adjust ./test-from-host.sh to have:
testscript=/home/bug/test.sh
#testscript=/home/bug/test-with-true.sh"

The kernel team has been able to confirm the symptoms.

Related bugs:
* bug 1371771
* bug 1371765
* bug 1377338

** Affects: linux (Ubuntu)
     Importance: Critical
     Assignee: Colin Ian King (colin-king)
         Status: Confirmed

** Description changed:

  Symptoms are that cache files in /var/cache/apparmor and profiles in
  /var/lib/apparmor/profiles are sometimes corrupted after a reboot. We've
  already fixed several bugs in the apparmor and click-apparmor and made
  both more robust in the face of corruption, but we've still not found
  the cause.
  
  The investigation is ongoing and this may not be a problem with the
  kernel at all, so this bug may be retargeted to another project.
  
  The security team and the kernel team have discussed this a lot and
  Colin is currently looking at this. This bug is just so it can be
  tracked. Here is an excerpt from my latest email to Colin:
  
  "I believe I have conclusively ruled out apparmor_parser and aa-
  clickhook by creating a new 'home/bug/test-with-true.sh'. Here is the
  test output:
  
  http://paste.ubuntu.com/8648109/
  
  Specifically, home/bug/test-with-true.sh changes the interesting parts
  of the algorithm to:
  
  1. wait for unity8 to start (this ensures the apparmor upstart job is 
finished)
  2. restore apparmor_parser and aa-clickhook, if needed
  3. if /home/bug/profiles... exists, perform a diff -Naur /home/bug/profiles...
-    /var/lib/apparmor/profiles and fail if differences (note, apparmor_parser
-    and aa-clickhook were /bin/true during boot so they could not have changed
-    /var/lib/apparmor/profiles)
+    /var/lib/apparmor/profiles and fail if differences (note, apparmor_parser
+    and aa-clickhook were /bin/true during boot so they could not have changed
+    /var/lib/apparmor/profiles)
  4. verify the profiles, exit with error if they do not
  5. alternately upgrade/downgrade the packages
  6. verify the profiles, exit with error if they do not
  7. copy the known good profiles in the previous step to /home/bug/profiles...
  8. have apparmor_parser and aa-clickhook point to /bin/true
  9. reboot
  10. go to step 1
  
  In the paste you'll notice that in step 6 the profiles were successfully
  created by the installation of the packages, then verified, then copied
  aside, then apparmor_parser and aa-clickhook diverted, then rebooted,
  only to have the profiles in /var/lib/apparmor/profiles be different
  than what was copied aside. It would be nice to verify on your device as
  well (I reproduced several times here) and verify the reproducer
  algorithm. I think this suggests this is a kernel issue and not
  userspace.
  
  IMPORTANT: you will want to update the reproducer and refollow all of these 
steps (ie, I updated the scripts, the debs, the sudoers file, etc):
  $ wget http://people.canonical.com/~jamie/cking/aa-corruption.tar.gz
  $ tar -zxvf ./aa-corruption.tar.gz
  ...
  
  $ adb push ./aa-corruption.tar.gz /tmp
  $ adb shell
  phablet@ubuntu-phablet:~$ cd /tmp
  phablet@ubuntu-phablet:~$ tar -zxvf ./aa-corruption.tar.gz
  phablet@ubuntu-phablet:~$ sudo mount -o remount,rw /
  phablet@ubuntu-phablet:~$ sudo cp ./aa-corruption/etc/sudoers.d/phablet
  /etc/sudoers.d/
  phablet@ubuntu-phablet:~$ sudo mount -o remount,ro /
  phablet@ubuntu-phablet:~$ sudo cp -a ./aa-corruption/home/bug /home
  phablet@ubuntu-phablet:~$ exit
  $ cd ./aa-corruption
  $ ./test-from-host.sh
  ...
  
  The old script is still in place. Simply adjust ./test-from-host.sh to have:
  testscript=/home/bug/test.sh
  #testscript=/home/bug/test-with-true.sh"
+ 
+ 
+ The kernel team has been able to confirm the symptoms.

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https://bugs.launchpad.net/bugs/1387214

Title:
  file corruption on touch images in rw portions of the filesystem

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