** Changed in: python-biopython (Debian)
Status: Unknown => New
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import Bio.PDB of python-biopython at gutsy
https://bugs.launchpad.net/bugs/156047
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Here is a patch resolving this problem
** Attachment added: "python-biopython_1.44-1ubuntu1.debdiff"
http://launchpadlibrarian.net/10663843/python-biopython_1.44-1ubuntu1.debdiff
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import Bio.PDB of python-biopython at gutsy
https://bugs.launchpad.net/bugs/156047
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Un-subscribing u-u-s as far as nothing needs sponsorship here. Feel free
to re-subscribe when Debian will upload a new revision, updating the Bug
Title to a sync request. Thanks.
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import Bio.PDB of python-biopython at gutsy
https://bugs.launchpad.net/bugs/156047
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The DD told me that this package should be uploaded before 13th, so I
guess we can wait for it, as Scott Kitterman suggested, and then
request for a Sync.
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import Bio.PDB of python-biopython at gutsy
https://bugs.launchpad.net/bugs/156047
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If it's required to make the package work Recommends is wrong whether or
not it's automatically installed.
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import Bio.PDB of python-biopython at gutsy
https://bugs.launchpad.net/bugs/156047
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Additionally, this fix is valid only in Debian ATM. Debian's APT
Development Team turned on installation of recommended packages since
0.7.7 (see http://lists.debian.org/debian-devel-
announce/2007/08/msg0.html, thanks norsetto for the link), while
Hardy still has 0.7.6*.
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import Bio.PDB of
Given that the Debian maintainer has said he'd fix this and there is not
currently an Ubuntu diff, I'd wait for Debian to fix it rather than do
an Ubuntu upload now that would require a manual merge (or at least
manual sync request) when the fixed Debian is uploaded. Then I'd revist
after Debian i
Added change of maintainer in the changelog
** Attachment added:
"python-biopython-recommends-python-numeric-ext-hardy-2.debdiff"
http://launchpadlibrarian.net/10512908/python-biopython-recommends-python-numeric-ext-hardy-2.debdiff
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import Bio.PDB of python-biopython at gutsy
https://bug
** Changed in: python-biopython (Ubuntu Gutsy)
Assignee: (unassigned) => Johan Euphrosine (proppy)
Status: New => In Progress
** Changed in: python-biopython (Ubuntu Hardy)
Assignee: Johan Euphrosine (proppy) => (unassigned)
Status: In Progress => Confirmed
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import Bio.
The following debdiff mirrors the changes from debian.
Please review.
** Attachment added:
"python-biopython-recommends-python-numeric-ext-hardy.debdiff"
http://launchpadlibrarian.net/10512751/python-biopython-recommends-python-numeric-ext-hardy.debdiff
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import Bio.PDB of python-biopytho
>From the Debian maintainer:
> Should it be moved into Recommends to solve this issue ?
Right, I'll fix that with the next upload.
Thanks
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Philipp Benner
** Changed in: python-biopython (Ubuntu)
Assignee: (unassigned) => Johan Euphrosine (proppy)
Status: Confirmed => In Progress
I've reported the problem to debian BTS.
** Bug watch added: Debian Bug tracker #452379
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=452379
** Also affects: python-biopython (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=452379
Importance: Unknown
Status: Unknow
To be honest, I am not sure plainly adding python-numeric-ext as
dependency is the best solution. Maybe the import error can be handled
more gracefully and make python-numeric-ext just a Recommends.
I also think the Debian maintainer should be consulted before we try fix
this bug with out own pat
I hope this fix the bug and all is correct, it is my first debdiff.
** Attachment added: "python-biopython_1.43-2ubuntu1.debdiff"
http://launchpadlibrarian.net/10174452/python-biopython_1.43-2ubuntu1.debdiff
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import Bio.PDB of python-biopython at gutsy
https://bugs.launchpad.net/bugs/156047
Thank you for your bug report. I can confirm this bug in Gutsy.
** Changed in: python-biopython (Ubuntu)
Status: New => Confirmed
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https://bugs.launchpad.net/bugs/156047
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Bug
** Tags added: bitesize packaging
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My system has been upgraded to gutsy from feisty by synaptic package manager.
When it was feisty, this worked well.
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