Thanks for your bug report. Unfortunately, because this bug is not
reported against any package, it didn't get any attention during a long
time.
However after reading the description, I think that the results you get
is normal, since you regenerate the ISO with two different tools, which
means
The customer decided to launch Ubuntu 9.04 as the shipping OS.
--
[West Lake] Ubuntu 8.10: md5sum is different by creating image/disc from the
same source.
https://bugs.launchpad.net/bugs/341586
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