Please try with gscan2pdf v1.0.0 from the PPA
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https://bugs.launchpad.net/bugs/889549
Title:
MAJOR BUG: gscan2pdf gimp integration creates page size error
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Public bug reported:
Testing on Ubuntu 11.04, with gscan2pdf 0.9.31-2 and gimp
2.6.11-1ubuntu6.2.
Scanning a DIN A4 piece of paper.
Using gscan2pdf's gimp integration to increase contrast and to blind
some of the information on the paper.
Saving in gimp to temporary file.
Closing gimp.
Saving