Public bug reported:

System Monitor resource is using the same color for two different processors 
graph in the CPU display.
When I set them different, and I stop and start the utility, when it comes back 
up, I expect the two processors trace color to be different.  Instead, the 
change is reflected in two processors again making them the same.  This seems 
to be something very new, in just the past few days, perhaps as a result of 
some recent update.

Release 11.10 Kernel 3.0.0-14 GNOME 3.2.1

** Affects: ubuntu
     Importance: Undecided
         Status: New

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https://bugs.launchpad.net/bugs/906365

Title:
  System Monitor Resources tab CPU display colors misbehaving

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